Databases
PubMed/Medline
PDB – Protein Data Bank
UNIPROT Database – Annotated Protein Structures
PDB – World-Wide Protein Data Bank
Nucleic Acid Database
LipidBank
Web of Science
National Center for Biotechnology Information
Science Direct
Other useful biophysics, structural biology and biotechnology links
- Deconvolution of the Circular Dichroism spectra using the CONTIN algorithm 1
- ExPaSy Proteomics Server
- Peptide Calculator (Bachem)
- Peptide Content Calculator (Bachem)
- Oligopeptide Calculator (Bachem)
- The DelPhi pKa websever at Clemson University
- Comparative protein structural modelling with MODELLER
- Protein Homology/analogY Recognition Engine V 2.0 (Phyre2) at Imperial College – London
- Protein structural modelling with SWISS-MODEL
- Merck Index
- Laboratory Calculations from Science Gateway
- Membrane Proteins of Known Structure
- Other useful links with Units of Measurement
- Automatic Converter of Measurement Units
- Physical constants
- Biotech Industry Supplier Registry: Site includes biotech suppliers, new projects, free magazines, jobs, news and events
- Tools for aligning DNA and Proteins
- All About Chemical Elements
- Other Online Tools for Molecular Biology/Protein Chemistry from Queen’s University
- SnapGene Viewer Software for DNA analysis
- All tools/European BioInformatics Institute
- Graphic software with PyMol
- UCSF Chimera – An Extensible Molecular Modeling System
- HOLE: Software that allows to measure the precise pore diameter
- YASARA: A molecular-graphics, -modeling and -simulation program for Windows and Linux
- Protein Explorer: easy yet powerful macromolecular visualization
- ProteinExplorer.pdf
- Molecular Visualization Resources at UMass – Amherst
- Orientations of proteins in membranes – at the University of Michigan
- Visual molecular dynamics viewer (VMD) at The University of Illinois at Urbana-Champaign
- Scalable molecular dynamics (NAMD) at The University of Illinois at Urbana-Champaign
- Buffer Calculator with Sigma-Aldrich
- Free version of Vector NTI Software with Invitrogen